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Home > Science > Biology > Biochemistry and Molecular Biology > Biomolecules > Software
Directory of Web Resources @ Expo Central : Software

Science > Biology > Biochemistry and Molecular Biology > Biomolecules > Software : Categories


Science > Biology > Biochemistry and Molecular Biology > Biomolecules > Software : Web Resources



Science > Biology > Biochemistry and Molecular Biology > Biomolecules > Software : Web-Sites


1. Amber [ Report dead link ]
A general purpose molecular mechanics and molecular dynamics package with the capability to compute free-energy changes.
http://amber.ch.ic.ac.uk/
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2. AMMP [ Report dead link ]
A free program suite for molecular mechanics, dynamics and modeling with some special features like docking or ab initio DFT calculations. Runs under Linux/Unix and Win9x. The site provides access to the documentation and offers on-line tutorials.
http://www.cs.gsu.edu/~cscrwh/ammp/ammp.html
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3. AutoDock [ Report dead link ]
A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
http://www.scripps.edu/pub/olson-web/doc/autodock/
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4. B: On-line Molecular Modeling [ Report dead link ]
"B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules and biopolymers. Supports nucleic acids (DNA/RNA), polypeptides, polysaccharides, the AMBER force field, geometry optimization, simulated annealing. Exports jpeg, gif, and ppm images.
http://www.scripps.edu/case/Biomer/
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5. BioAdviser [ Report dead link ]
Package for displaying, analyzing, and manipulating 3D structures of biological macromolecules, with special emphasis on the study of proteins and enzymes. Includes links to other products by FQS Poland, in Krakow.
http://www.fqspl.com.pl/bioadviser/
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6. CADD tools in Drug R&D [ Report dead link ]
PSCAN, PMOL2Q, DBFILTER download page. Taichung, Taiwan.
http://home.pchome.com.tw/team/gentamicin/mol/mol.htm
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7. CHARMM [ Report dead link ]
A program for macromolecular dynamics and mechanics. It performs standard molecular dynamics in many different ensembles (e.g., NVE, NVT, NPT) using state-of-the-art algorithms for timestepping, long range force calculation and periodic images.
http://www.scripps.edu/brooks/charmm_docs/charmm.html
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8. ChemVis [ Report dead link ]
Visualization of physico-chemical structures in VML, from research at the Universities of Stuttgart and Erlangen in Nürnberg, Germany.
http://www2.chemie.uni-erlangen.de/projects/ChemVis/
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9. DL Poly [ Report dead link ]
A parallel molecular dynamics simulation package.
http://www.cse.clrc.ac.uk/msi/software/DL_POLY/
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10. EGO [ Report dead link ]
A parallel program for molecular dynamics simulations of biomolecules.
http://www.lrz-muenchen.de/~heller/ego/
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Science > Biology > Biochemistry and Molecular Biology > Biomolecules > Software : Web Resources


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