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Science > Biology > Bioinformatics > Software

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Home > Science > Biology > Bioinformatics > Software
Directory of Web Resources @ Expo Central : Software

Science > Biology > Bioinformatics > Software : Categories


Science > Biology > Bioinformatics > Software : Web Resources



Science > Biology > Bioinformatics > Software : Web-Sites


21. Genome-tools Web Interface [ Report dead link ]
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
http://sourceforge.net/projects/genome-tools/
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22. Gints [ Report dead link ]
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
http://gints.free.fr/english/eng_whatsAbout.htm
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23. GoCore [ Report dead link ]
GoCore is an free Excel based tool for protein sequence alignment, comparisons and functional predictions in a simple, visually appealing, manner.
http://www.helsinki.fi/project/ritvos/GoCore/
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24. HMMER [ Report dead link ]
Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
http://hmmer.wustl.edu/
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25. INCA - INteractive Codon Analysis [ Report dead link ]
Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
http://www.bioinfo-hr.org/inca
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26. JAligner [ Report dead link ]
Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
http://jaligner.sourceforge.net/
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27. JSTRING [ Report dead link ]
Java program for searching Tandem Repeats (TR) in a DNA sequence. It shows the results also in a graphical format.
http://bioinf.dms.med.uniroma1.it/JSTRING/
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28. Keck Computational Systems Biology Software [ Report dead link ]
Software for simulating metabolic, signal and genetic networks. Home of Jarnac, JDesigner and SCAMP.
http://sbw.kgi.edu/
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29. limmaGUI [ Report dead link ]
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.
http://bioinf.wehi.edu.au/limmaGUI/index.html
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30. MAFFT [ Report dead link ]
Multiple sequence alignment program for linux and other unix-like operating systems. Offers a range of multiple alignment strategies.
http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/
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Science > Biology > Bioinformatics > Software : Web Resources


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